Bioinformatician B/C (Department of Microbiology ) - University of Pennsylvania

University Overview


The University of Pennsylvania, the largest private employer in Philadelphia, is a world-renowned leader in education, research, and innovation. This historic, Ivy League school consistently ranks among the top 10 universities in the annual U.S. News & World Report survey. Penn has 12 highly-regarded schools that provide opportunities for undergraduate, graduate and continuing education, all influenced by Penn’s distinctive interdisciplinary approach to scholarship and learning. As an employer Penn has been ranked nationally on many occasions with the most recent award from Forbes who named Penn one of America’s Best Large Employers in 2023.




Penn offers a unique working environment within the city of Philadelphia. The University is situated on a beautiful urban campus, with easy access to a range of educational, cultural, and recreational activities. With its historical significance and landmarks, lively cultural offerings, and wide variety of atmospheres, Philadelphia is the perfect place to call home for work and play.




The University offers a competitive benefits package that includes excellent healthcare and tuition benefits for employees and their families, generous retirement benefits, a wide variety of professional development opportunities, supportive work and family benefits, a wealth of health and wellness programs and resources, and much more.








Posted Job Title

Bioinformatician B/C (Department of Microbiology )





Job Profile Title

Bioinformatician B





Job Description Summary

The Bioinformatician in the PennCHOP Microbiome Program (PCMP) will develop and apply bioinformatic methods for analysis of large sequence-based microbiome data sets.



The Bioinformatician will interact with the PIs and laboratory directors across the program to carry out data analysis, working collaboratively to identify and select the analytical methods that are most appropriate for each study. They will encounter a wide array of experimental designs and will troubleshoot problems/challenges that may occur during the analysis, keeping collaborators appraised of project progress. The Bioinformatician will also design, implement and validate new bioinformatics approaches and participate in statistical methods of development for microbiome studies. The Bioinformatician is expected to prepare figures and written reports for publication and grant submission. They will be asked to present at internal meetings and symposia regarding new tools and results.





Job Description


Job Responsibilities


The Bioinformatician will apply existing methods and develop new statistical and bioinformatic approaches for analysis of high-throughput sequencing data in microbiome studies. They will maintain computational pipelines and software infrastructure. They will craft figures and written reports for publications and grant applications. They will interface regularly with PennCHOP Microbiome Program PIs and laboratory directors to align their work with organizational goals.




Bioinformatician B -will focus on developing and implementing bioinformatic methods for analysis of large sequence-based data sets. Topics include analyzing the integration of new DNA into genomes, and structure and function of the human virome and microbiome. The Bioinformatician will interact with the PCMP’s PIs, visiting scientists and research collaborators daily using a wide array of experimental designs; manage the laboratory information manager system (LIMs); troubleshoot any problems that may occur during a study, including bug fixes, database maintenance, and custom statistical analysis; and carry out analysis of deep sequencing data to characterize genome dynamics. The bioinformatician will also keep the PCMP’s PIs and collaborators appraised of project progress and will plan and carry out new bioinformatic analysis and statistical methods development. The successful applicant will prepare written reports for publication and grant submission. Bioinformatician C -will work independently to provide bioinformatics support to the faculty and staff, perform complex computational and statistical methods development, and supervise other programmers. Focus on developing and implementing bioinformatic methods for analysis of large sequence-based data sets. Topics include analyzing the integration of new DNA into genomes, and structure and function of the human virome and microbiome. The Bioinformatician will interact with the PCMP’s PIs, visiting scientists and research collaborators daily using a wide array of experimental designs; manage the laboratory information manager system (LIMs); troubleshoot any problems that may occur during a study, including bug fixes, database maintenance, and custom statistical analysis; and carry out analysis of deep sequencing data to characterize genome dynamics. The bioinformatician will also keep the PCMP’s PIs and collaborators appraised of project progress, and will plan and carry out new bioinformatic analysis and statistical methods development. The successful applicant will prepare written reports for publication and grant submission. Present results at national meetings regarding new tools and findings.




Qualifications


Bioinformatician B: Master's Degree and 3 - 4 years of experience in a scientific or engineering discipline or an equivalent combination of education and experience required. Ph.D. preferred. Completed coursework in bioinformatics, biology, computer science, and statistics. Expertise in coding and biology/bioinformatics required. Additional experience in statistical analysis, programming in R, parallel/distributed computing, and database management would be helpful. Bioinformatician C: Master's degree and 5 - 6 years of experience or an equivalent combination of education and experience required. Ph.D and 2 years of experience preferred. Experience in a Bioinformatics B position preferred, with added education and experience in coding and bioinformatic applications. experience in statistical analysis, programming in R, parallel/distributed computing, and database management would be helpful.




Position is contingent upon funding.




Targeted Pay (B) - $101K


Targeted Pay (C) - $118K


Salary offers are made based on the candidate's qualifications, experience, skills, and education as they directly relate to the requirements of the position, as well as internal and market factors and grade profile.






Job Location - City, State

Philadelphia, Pennsylvania





Department / School

Perelman School of Medicine





Pay Range

$61,046.00 - $118,835.00 Annual Rate

Salary offers are made based on the candidate’s qualifications, experience, skills, and education as they directly relate to the requirements of the position, as well as internal and market factors and grade profile.










Affirmative Action Statement Penn adheres to a policy that prohibits discrimination on the basis of race, color, sex, sexual orientation, gender identity, religion, creed, national or ethnic origin, citizenship status, age, disability, veteran status, or any other legally protected class.




Special Requirements Background check required after a conditional job offer is made. Consideration of the background check will be tailored to the requirements of the job.




University Benefits

+ Health, Life, and Flexible Spending Accounts : Penn offers comprehensive medical, prescription, behavioral health, dental, vision, and life insurance benefits to protect you and your family’s health and welfare. You can also use flexible spending accounts to pay for eligible health care and dependent care expenses with pre-tax dollars.

+ Tuition : Take advantage of Penn's exceptional tuition benefits . You, your spouse, and your dependent children can get tuition assistance here at Penn. Your dependent children are also eligible for tuition assistance at other institutions.

+ Retirement: Penn offers generous retirement plans to help you save for your future. Penn’s Basic, Matching, and Supplemental retirement plans allow you to save for retirement on a pre-tax or Roth basis. Choose from a wide variety of investment options through TIAA and Vanguard.

+ Time Away from Work: Penn provides you with a substantial amount of time away from work during the course of the year. This allows you to relax, take vacations, attend to personal affairs, recover from illness or injury, spend time with family—whatever your personal needs may be.

+ Long-Term Care Insurance: In partnership with Genworth Financial, Penn offers faculty and staff (and your eligible family members) long-term care insurance to help you cover some of the costs of long-term care services received at home, in the community or in a nursing facility. If you apply when you’re newly hired, you won’t have to provide proof of good health or be subject to underwriting requirements. Eligible family members must always provide proof of good health and are subject to underwriting.

+ Wellness and Work-life Resources : Penn is committed to supporting our faculty and staff as they balance the competing demands of work and personal life. That’s why we offer a wide variety of programs and resources to help you care for your health, your family, and your work-life balance.

+ Professional and Personal Development: Penn provides an array of resources to help you advance yourself personally and professionally.

+ University Resources: As a member of the Penn community, you have access to a wide range of University resources as well as cultural and recreational activities. Take advantage of the University’s libraries and athletic facilities, or visit our arboretum and art galleries. There’s always something going on at Penn, whether it’s a new exhibit at the Penn Museum, the latest music or theater presentation at the Annenberg Center, or the Penn Relays at Franklin Field to name just a few examples. As a member of the Penn community, you’re right in the middle of the excitement—and you and your family can enjoy many of these activities for free.

+ Discounts and Special Services : From arts and entertainment to transportation and mortgages, you'll find great deals for University faculty and staff. Not only do Penn arts and cultural centers and museums offer free and discounted admission and memberships to faculty and staff. You can also enjoy substantial savings on other goods and services such as new cars from Ford and General Motors, cellular phone service plans, movie tickets, and admission to theme parks.

+ Flexible Work Hours: Flexible work options offer creative approaches for completing work while promoting balance between work and personal commitments. These approaches involve use of non-traditional work hours, locations, and/or job structures.

+ Penn Home Ownership Services: Penn offers a forgivable loan for eligible employees interested in buying a home or currently residing in West Philadelphia, which can be used for closing costs or home improvements.

+ Adoption Assistance: Penn will reimburse eligible employees on qualified expenses in connection with the legal adoption of an eligible child, such as travel or court fees, for up to two adoptions in your household.




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To learn more, please visit: https://www.hr.upenn.edu/PennHR/benefits-pay



The University of Pennsylvania's special character is reflected in the diversity of the Penn community. We seek talented faculty and staff who will constitute a vibrant community that draws on the strength that comes with a substantive institutional commitment to diversity along dimensions of race, ethnicity, gender, sexual orientation, age, religion, disability, veteran status, interests, perspectives, and socioeconomic status. Grounded in equal opportunity, nondiscrimination, and affirmative action, Penn's robust commitment to diversity is fundamental to the University's mission of advancing knowledge, educating leaders for all sectors of society, and public service. The University of Pennsylvania prohibits unlawful discrimination based on race, color, sex, sexual orientation, gender identity, religion, creed, national or ethnic origin, citizenship status, age, disability, veteran status, or any other legally protected class.